Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118639452_118645735_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

118639452 - 118645735

Intron Length:

6284

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGCTTA

5'SS Class:

strong_major

3'SS Sequence:

AATTTTGTTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

ACTTTTCTAATT

Flanking Amino Acid:

HEDEGEDSSKVNGGEKRPAS

Intron Amino Acid Position:

231

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.74

38.1

Major BPS

100

1.24

0.5

100

Major PPT

79.6

0.67

72.9

41.4

Minor 5ss

-0.4

3.2

63.9

47.7

Minor BPS

58.5

0.34

1.6

73.99

37.6

Associated Gene:

Gene:

TOX

Ensembl Gene ID:

ENSAPLG00000009552

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036795

118602645 - 118725577

122933

ENSAPLT00000026663

118602645 - 118770827

168183

ENSAPLT00000021281

118602645 - 118788409

185765

ENSAPLT00000009957

118602645 - 118823794

221150