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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118646015_118691518_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
118646015 - 118691518
Intron Length:
45504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
ATATGCTTAATG
Flanking Amino Acid:
GTLLSNSLSVMQDLRNTEGA
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
75.1
0.62
1
65.6
41
Major PPT
85.4
0.8
0.6
81.4
23.6
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
62.9
0.27
1.8
66.59
41.4

Associated Gene:

Gene:
TOX
Ensembl Gene ID:
ENSAPLG00000009552
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026663
118602645 - 118770827
168183
ENSAPLT00000021281
118602645 - 118788409
185765
ENSAPLT00000009957
118602645 - 118823794
221150
ENSAPLT00000036795
118602645 - 118725577
122933