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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118691762_118711099_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
118691762 - 118711099
Intron Length:
19338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTCTGTATTT
Flanking Amino Acid:
PSQDYVPASQSFPGPSLESE
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
76.3
30.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
87.6
0.84
0.8
85.1
34.9
Minor 5ss
32.7
-2
3.1
39.4
46.5
Minor BPS
56.4
0.28
2.2
83.14
39

Associated Gene:

Gene:
TOX
Ensembl Gene ID:
ENSAPLG00000009552
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009957
118602645 - 118823794
221150
ENSAPLT00000036795
118602645 - 118725577
122933
ENSAPLT00000026663
118602645 - 118770827
168183
ENSAPLT00000021281
118602645 - 118788409
185765