About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118711166_118725530_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
118711166 - 118725530
Intron Length:
14365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
ATTTCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTTACTATTATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
77.2
32.8
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
87
0.83
0.7
81.4
29.7
Minor 5ss
36.1
-1.6
2.9
47.9
41.8
Minor BPS
51.6
0.13
1.9
77.6
38.7

Associated Gene:

Gene:
TOX
Ensembl Gene ID:
ENSAPLG00000009552
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036795
118602645 - 118725577
122933