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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118711166_118823692_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
118711166 - 118823692
Intron Length:
112527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACTCGC
5'SS Class:
major
3'SS Sequence:
ATTTCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTTACTATTATT
Flanking Amino Acid:
PCLDPYYCNKFDGENMYMSM
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
63.1
43.4
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
87
0.83
0.7
81.4
29.7
Minor 5ss
34.7
-1.7
2.9
44.7
43.1
Minor BPS
51.6
0.13
1.9
77.6
38.7

Associated Gene:

Gene:
TOX
Ensembl Gene ID:
ENSAPLG00000009552
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009957
118602645 - 118823794
221150