Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_11872141_11911830_R

Intron Information:

Intron Rank:

130417

Intron Class:

major

Intron Phase:

Intron Coordinates:

11872141 - 11911830

Intron Length:

39690

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTGGA

5'SS Class:

strong_major

3'SS Sequence:

TATGCTTTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGCTAT

U12 Branch Point Sequence:

TATGCTTTTACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

74.2

36.5

Major BPS

58.7

0.22

1.5

58.5

47.9

Major PPT

82.7

0.74

0.9

76.3

37.4

Minor 5ss

32.2

-2

3.1

37.6

42.2

Minor BPS

61.4

0.35

1.7

71.96

40.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017423

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038156

11872012 - 11942570

70559