Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_11885777_11911830_R

Intron Information:

Intron Rank:

130419

Intron Class:

major

Intron Phase:

Intron Coordinates:

11885777 - 11911830

Intron Length:

26054

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTGGA

5'SS Class:

strong_major

3'SS Sequence:

TTCACTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATGAT

U12 Branch Point Sequence:

TTGTATATAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

74.2

36.5

Major BPS

84.6

0.86

41.2

Major PPT

82.6

0.73

0.8

76.9

31.6

Minor 5ss

32.2

-2

3.1

37.6

42.2

Minor BPS

61.2

0.43

1.8

81.88

39.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017423

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045764

11885629 - 11924226

38598