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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118918552_118918888_F

Intron Information:

Intron Rank:
124047
Intron Class:
major
Intron Phase:
Intron Coordinates:
118918552 - 118918888
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
AATAACACAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81.3
32.8
Major BPS
61.3
0.28
1
62
30.6
Major PPT
89
0.88
0.7
85
29.8
Minor 5ss
30.6
-2.2
2.6
36.7
40.4
Minor BPS
45.4
-0.3
1.9
59.07
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016871
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039534
118913096 - 118944101
31006