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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118919019_118943895_F

Intron Information:

Intron Rank:
124048
Intron Class:
major
Intron Phase:
Intron Coordinates:
118919019 - 118943895
Intron Length:
24877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
CTCCTTGTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
80.3
0.68
0.9
73.2
37.3
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
49
0.01
2
67.89
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016871
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039534
118913096 - 118944101
31006