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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119112460_119119774_R

Intron Information:

Intron Rank:
143578
Intron Class:
major
Intron Phase:
Intron Coordinates:
119112460 - 119119774
Intron Length:
7315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTTTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
GACACATTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
68.7
39.1
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
74.4
0.55
1.1
75.7
37.8
Minor 5ss
36.9
-1.5
3
39.1
46.1
Minor BPS
57.5
0.23
1.7
63.85
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024580
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047595
119112243 - 119120223
7981