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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119117244_119123356_F

Intron Information:

Intron Rank:
139025
Intron Class:
major
Intron Phase:
Intron Coordinates:
119117244 - 119123356
Intron Length:
6113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCTCACACAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
72.7
0.56
1
75
30.1
Major PPT
85
0.79
0.7
80.2
25.3
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
44.5
-0.3
2
65.67
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024846
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035855
118963089 - 119123788
160700