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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_11911962_11919312_R

Intron Information:

Intron Rank:
130413
Intron Class:
major
Intron Phase:
Intron Coordinates:
11911962 - 11919312
Intron Length:
7351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
TGCTTGTTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGCTTGTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1
58.5
40.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
69.5
0.44
1
65.5
39.9
Minor 5ss
28.8
-2.4
3
32.9
35.8
Minor BPS
55.6
0.17
2
67
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017423
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025719
11903399 - 11924226
20828