Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119119879_119127017_R

Intron Information:

Intron Rank:

143577

Intron Class:

major

Intron Phase:

Intron Coordinates:

119119879 - 119127017

Intron Length:

7139

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCCCC

5'SS Class:

strong_major

3'SS Sequence:

ACTTCTGCAGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

ATCTGCTGATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

65.8

40.2

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

0.41

63.1

37.6

Minor 5ss

33.7

-1.9

42.6

44.4

Minor BPS

48.6

-0

2.1

71.08

45.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024580

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036419

119116424 - 119127086

10663