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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119139068_119140665_F

Intron Information:

Intron Rank:
149810
Intron Class:
major
Intron Phase:
Intron Coordinates:
119139068 - 119140665
Intron Length:
1598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTGTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATCAA
U12 Branch Point Sequence:
TCTGCTTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.7
29.9
Major BPS
66.7
0.42
1.1
69.7
35.6
Major PPT
65
0.34
1
58.3
42
Minor 5ss
32.9
-1.9
2.9
37.3
41.2
Minor BPS
50
0.08
1.9
71.47
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030601
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048443
119138218 - 119140907
2690