About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1191939_1192128_R


Intron Information:

Intron Rank:
129797

Intron Class:
major

Intron Phase:

Intron Coordinates:
1191939 - 1192128

Intron Length:
190

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTATTTGTG

5'SS Class:
major

3'SS Sequence:
TCTTGCTGGACAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TGACAAT

U12 Branch Point Sequence:
TCTTGCTGGACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
77.6
0.65
1
70.7
39.5

Major BPS
50
0
1.4
59.1
44.1

Major PPT
67.9
0.4
1.1
64.3
41.6

Minor 5ss
42.5
-0.8
3.1
57.9
46.8

Minor BPS
56
0.18
2
71.03
41.3

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

1191604 - 1192311
708