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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_11919437_11923379_R

Intron Information:

Intron Rank:
130414
Intron Class:
major
Intron Phase:
Intron Coordinates:
11919437 - 11923379
Intron Length:
3943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTCCTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.8
0.87
0.7
84.3
29.4
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
75.1
0.87
1.7
90.25
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017423
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025719
11903399 - 11924226
20828