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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119204795_119224943_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
119204795 - 119224943
Intron Length:
20149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTGTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTTCTCTATTT
Flanking Amino Acid:
TVNFKAFPMELHLMHWNSTL
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.3
0.64
0.9
76.8
37.4
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
56.1
0.27
1.9
78.83
37.8

Associated Gene:

Gene:
CA8
Ensembl Gene ID:
ENSAPLG00000005583
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026961
119182957 - 119225369
42413
ENSAPLT00000005789
119182957 - 119229442
46486