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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1192215_1197792_R

Intron Information:

Intron Rank:
129799
Intron Class:
major
Intron Phase:
Intron Coordinates:
1192215 - 1197792
Intron Length:
5578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTATC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTCCCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.73
1
77.9
36.8
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
82.6
0.73
0.7
81.4
29
Minor 5ss
39
-1.2
3.1
50.7
40.4
Minor BPS
61
0.43
1.6
77.02
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017026
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041051
1188252 - 1198732
10481