Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119225069_119229034_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

119225069 - 119229034

Intron Length:

3966

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATAGCGA

5'SS Class:

major

3'SS Sequence:

TGTTCTTTCCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTTAC

U12 Branch Point Sequence:

AGTTTGTTACCA

Flanking Amino Acid:

SIQIALKSKSVLIGGPLPRG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.7

0.47

1.1

55.6

43.1

Major BPS

71.4

0.53

1.2

63.4

Major PPT

83.9

0.76

0.8

76.7

37.4

Minor 5ss

35.6

-1.6

3.3

47.5

Minor BPS

48.9

-0

2.3

65.76

40.9

Associated Gene:

Gene:

CA8

Ensembl Gene ID:

ENSAPLG00000005583

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005789

119182957 - 119229442

46486