Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119304644_119315141_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

119304644 - 119315141

Intron Length:

10498

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

TTGTCTTCTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

TTGTCTTCTACA

Flanking Amino Acid:

KQIKLQIWDTAGQESFRSIT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.6

0.93

0.9

87.4

Major BPS

71.2

0.53

70.3

31.9

Major PPT

85.6

0.8

80.4

31.7

Minor 5ss

37.9

-1.4

2.9

52.2

44.4

Minor BPS

56.5

0.2

1.9

71.31

40.9

Associated Gene:

Gene:

RAB2A

Ensembl Gene ID:

ENSAPLG00000005615

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044303

119286797 - 119333317

46521

ENSAPLT00000005821

119286321 - 119333317

46997