About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119316714_119319861_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
119316714 - 119319861
Intron Length:
3148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCATCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTTTTCCATC
Flanking Amino Acid:
NMVIMLIGNKSDLESRREVK
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
78.4
30.1
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
79.7
0.67
0.7
78.6
28.5
Minor 5ss
41.9
-0.9
3.2
59
45.7
Minor BPS
50.2
-0
1.9
69.41
36.9

Associated Gene:

Gene:
RAB2A
Ensembl Gene ID:
ENSAPLG00000005615
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044303
119286797 - 119333317
46521
ENSAPLT00000005821
119286321 - 119333317
46997