Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119349969_119387862_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

119349969 - 119387862

Intron Length:

37894

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTGAGTATC

5'SS Class:

major

3'SS Sequence:

CCGCTTCCTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCAACAT

U12 Branch Point Sequence:

TTTTCCTTTCTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.1

74.3

36.2

Major BPS

58.4

0.21

1.2

65.6

39.7

Major PPT

70.3

0.46

0.8

61.9

34.9

Minor 5ss

36.8

-1.5

2.9

46.6

41.8

Minor BPS

48.5

-0

3.6

87.87

37.8

Associated Gene:

Gene:

CHD7

Ensembl Gene ID:

ENSAPLG00000005873

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006263

119349278 - 119475485

126208