About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119389721_119417275_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
119389721 - 119417275
Intron Length:
27555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AAAATTTTATTT
Flanking Amino Acid:
NTPQKVPVLQHSPSEPFLEK
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73.2
39.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.2
0.75
0.8
81
31
Minor 5ss
44.2
-0.6
2.9
59.3
45.5
Minor BPS
48.5
-0
1.5
60.56
37.2

Associated Gene:

Gene:
CHD7
Ensembl Gene ID:
ENSAPLG00000005873
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006263
119349278 - 119475485
126208