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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119435178_119436594_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
119435178 - 119436594
Intron Length:
1417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
TTTTGAGTAAGA
Flanking Amino Acid:
VEEFYVKYKNFSYLHCQWAS
Intron Amino Acid Position:
835

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
81.8
31
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
85
0.79
0.7
77.9
36.6
Minor 5ss
40
-1.1
2.9
57.3
41.2
Minor BPS
43.8
-0.4
2.7
68.02
44.4

Associated Gene:

Gene:
CHD7
Ensembl Gene ID:
ENSAPLG00000005873
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006263
119349278 - 119475485
126208