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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119436710_119438453_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
119436710 - 119438453
Intron Length:
1744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTTTG
5'SS Class:
major
3'SS Sequence:
TTTCCTTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTTTTTTGACT
Flanking Amino Acid:
KQGQNKFLSEIDDELFNPDY
Intron Amino Acid Position:
874

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
74.2
37
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
75.8
0.58
1
73.1
36
Minor 5ss
55.7
0.19
2.3
66.6
38.8
Minor BPS
82
1.09
0.9
94.3
25.7

Associated Gene:

Gene:
CHD7
Ensembl Gene ID:
ENSAPLG00000005873
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006263
119349278 - 119475485
126208