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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119439700_119439937_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
119439700 - 119439937
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTACGTAAA
5'SS Class:
major
3'SS Sequence:
GTTATATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTTTGTTATAT
Flanking Amino Acid:
VNWLLFNWYNTRNCILADEM
Intron Amino Acid Position:
988

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.3
74.3
38
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
81.4
0.71
0.9
77.9
40.4
Minor 5ss
35.4
-1.7
2.9
40.7
39
Minor BPS
51.2
0.12
2.3
80.55
41.4

Associated Gene:

Gene:
CHD7
Ensembl Gene ID:
ENSAPLG00000005873
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006263
119349278 - 119475485
126208