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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119447723_119449897_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
119447723 - 119449897
Intron Length:
2175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTGC
5'SS Class:
major
3'SS Sequence:
ATATGTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATATAACA
Flanking Amino Acid:
EFGDLKTEEQVQKLQAILKP
Intron Amino Acid Position:
1177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
66
40.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.8
0.56
0.9
66.5
44.4
Minor 5ss
44.3
-0.6
2.8
59.8
44.8
Minor BPS
60.9
0.34
1.8
75.96
34.5

Associated Gene:

Gene:
CHD7
Ensembl Gene ID:
ENSAPLG00000005873
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006263
119349278 - 119475485
126208