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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119450154_119454607_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119450154 - 119454607
Intron Length:
4454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGCCTT
5'SS Class:
major
3'SS Sequence:
CCAATCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATGTATT
Flanking Amino Acid:
KCCNHPYLINGAEEKILEEF
Intron Amino Acid Position:
1262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
65.4
46
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
75.4
0.57
0.9
68.7
36.8
Minor 5ss
42.6
-0.8
3.5
61.4
44.5
Minor BPS
49.5
0.04
2.1
75.09
41.1

Associated Gene:

Gene:
CHD7
Ensembl Gene ID:
ENSAPLG00000005873
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006263
119349278 - 119475485
126208