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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119454819_119455358_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
119454819 - 119455358
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGAGCA
5'SS Class:
major
3'SS Sequence:
ATCTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCAGTAAAA
Flanking Amino Acid:
DILEDYLIQRRYPYERIDGR
Intron Amino Acid Position:
1332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
65.2
34.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
84.1
0.77
0.8
81.9
33.8
Minor 5ss
25.8
-2.8
3.1
31.5
42.2
Minor BPS
54.9
0.15
2.3
78.09
38.1

Associated Gene:

Gene:
CHD7
Ensembl Gene ID:
ENSAPLG00000005873
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006263
119349278 - 119475485
126208