Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119456818_119457098_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

119456818 - 119457098

Intron Length:

281

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGTGCACT

5'SS Class:

major

3'SS Sequence:

TCATATTTACTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

GTTTTCATATTT

Flanking Amino Acid:

SEGKGSTFAKASFVASGNRT

Intron Amino Acid Position:

1514

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

0.9

73.2

37.5

Major BPS

100

1.24

0.5

100

Major PPT

69.1

0.43

63.1

42.5

Minor 5ss

42.7

-0.8

2.8

58.1

46.3

Minor BPS

55.1

0.24

1.9

77.23

39.4

Associated Gene:

Gene:

CHD7

Ensembl Gene ID:

ENSAPLG00000005873

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006263

119349278 - 119475485

126208