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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119459390_119462762_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
119459390 - 119462762
Intron Length:
3373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAGAA
U12 Branch Point Sequence:
AAGTTAAGAACT
Flanking Amino Acid:
YRKHLKHHCNKVLLRVRMLY
Intron Amino Acid Position:
1739

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
58.2
0.21
1.1
55.4
40.4
Major PPT
81.7
0.71
0.7
73
31.9
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
45
-0.3
1.9
62.81
40.5

Associated Gene:

Gene:
CHD7
Ensembl Gene ID:
ENSAPLG00000005873
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006263
119349278 - 119475485
126208