About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119466597_119466757_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
119466597 - 119466757
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTGACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAC
U12 Branch Point Sequence:
TCTTCTTTGACT
Flanking Amino Acid:
REAIITEKRQKWTRREEADF
Intron Amino Acid Position:
1966

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
61.7
0.29
1.1
55
40.4
Major PPT
70.5
0.46
1
66.3
39.5
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
82.3
1.1
1
90.81
33.2

Associated Gene:

Gene:
CHD7
Ensembl Gene ID:
ENSAPLG00000005873
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006263
119349278 - 119475485
126208