Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119470233_119470477_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

119470233 - 119470477

Intron Length:

245

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCAAGGCTG

5'SS Class:

strong_major

3'SS Sequence:

TACATTTCATTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

AACTCCTTACAT

Flanking Amino Acid:

DITASPQLSKEDALNLSVPR

Intron Amino Acid Position:

2392

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.7

1.03

0.8

38.3

Major BPS

84.4

0.85

34.5

Major PPT

67.8

0.4

0.9

67.3

38.6

Minor 5ss

-3

4.1

37.6

47.1

Minor BPS

59.4

0.37

1.8

72.93

43.5

Associated Gene:

Gene:

CHD7

Ensembl Gene ID:

ENSAPLG00000005873

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006263

119349278 - 119475485

126208