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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119470596_119470823_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119470596 - 119470823
Intron Length:
228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTGAGTCTC
5'SS Class:
major
3'SS Sequence:
GGCTCTTTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
GGCTCTTTAATA
Flanking Amino Acid:
RNLMEMVAQLHGEPPMKRRR
Intron Amino Acid Position:
2431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
72.2
39.5
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
66.3
0.37
1
61.7
38.8
Minor 5ss
34.7
-1.7
3
43.9
36.8
Minor BPS
69.4
0.6
1.2
68.48
38.3

Associated Gene:

Gene:
CHD7
Ensembl Gene ID:
ENSAPLG00000005873
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006263
119349278 - 119475485
126208