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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119471740_119472135_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
119471740 - 119472135
Intron Length:
396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
CTCTTATTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TTTCTCTTATTT
Flanking Amino Acid:
YTVDMPSYVPKSADVLFSPF
Intron Amino Acid Position:
2538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
84.8
0.78
0.8
76.8
36.4
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
68.2
0.65
1.5
84.89
35.8

Associated Gene:

Gene:
CHD7
Ensembl Gene ID:
ENSAPLG00000005873
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006263
119349278 - 119475485
126208