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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119549796_119555741_R

Intron Information:

Intron Rank:
147689
Intron Class:
major
Intron Phase:
Intron Coordinates:
119549796 - 119555741
Intron Length:
5946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCATTCT
5'SS Class:
major
3'SS Sequence:
CTACTCTACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CTGTACATAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
71
35.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
70.3
0.46
0.9
64.8
35.2
Minor 5ss
35.7
-1.6
3.2
50.5
46
Minor BPS
52.9
0.09
1.8
65.09
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026804
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045380
119549428 - 119560583
11156