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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119555906_119560462_R

Intron Information:

Intron Rank:
147690
Intron Class:
major
Intron Phase:
Intron Coordinates:
119555906 - 119560462
Intron Length:
4557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
ATTATTCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TTACATATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.4
38.7
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
72.6
0.51
1
67.3
38.5
Minor 5ss
26.1
-2.7
2.9
22.8
37.4
Minor BPS
48
-0
1.8
70.17
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026804
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045380
119549428 - 119560583
11156