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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_11959242_11960003_F

Intron Information:

Intron Rank:
133262
Intron Class:
major
Intron Phase:
Intron Coordinates:
11959242 - 11960003
Intron Length:
762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTTTC
5'SS Class:
major
3'SS Sequence:
TTAATTCTGTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
ACAATCTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
74.3
37.2
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
70
0.45
1
70.5
40.9
Minor 5ss
39.7
-1.2
3
52.8
44.4
Minor BPS
64.9
0.54
1.3
71.47
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021655
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034354
11959109 - 11963805
4697
ENSAPLT00000018809
11959109 - 11963805
4697