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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_11961130_11962558_F

Intron Information:

Intron Rank:
133264
Intron Class:
major
Intron Phase:
Intron Coordinates:
11961130 - 11962558
Intron Length:
1429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATATATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
72
39.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
93.6
0.98
0.6
89.1
19.8
Minor 5ss
37.3
-1.4
2.8
48.1
41.6
Minor BPS
48.8
-0
2.2
75.36
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021655
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034354
11959109 - 11963805
4697
ENSAPLT00000018809
11959109 - 11963805
4697