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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_11963474_11963572_F

Intron Information:

Intron Rank:
133266
Intron Class:
major
Intron Phase:
Intron Coordinates:
11963474 - 11963572
Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTAATAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.6
0.8
0.7
80.5
30.9
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
59.5
0.29
1.8
77.19
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021655
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018809
11959109 - 11963805
4697