About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119668722_119696846_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
119668722 - 119696846
Intron Length:
28125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATGTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
LLFAANWDQSRNSFIDILRA
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
83.9
27.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.6
0.73
0.8
81.3
30.8
Minor 5ss
35.6
-1.6
3.4
49
47.2
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
CLVS1
Ensembl Gene ID:
ENSAPLG00000006781
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036331
119668100 - 119746796
78697
ENSAPLT00000007027
119668100 - 119760571
92472