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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_11973920_11979691_R

Intron Information:

Intron Rank:
129685
Intron Class:
major
Intron Phase:
Intron Coordinates:
11973920 - 11979691
Intron Length:
5772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TTTACAGTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.8
34
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
92.3
0.95
0.6
85.1
29.7
Minor 5ss
36.2
-1.6
3.5
52.1
45.1
Minor BPS
49.5
0.04
2.3
79.62
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016946
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035349
11973091 - 11981699
8609