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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119765980_119771776_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
119765980 - 119771776
Intron Length:
5797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCAC
5'SS Class:
major
3'SS Sequence:
TTTTGTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
ACTACACTAACG
Flanking Amino Acid:
GCRIRCAQENRTWEEGKVLI
Intron Amino Acid Position:
802

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
66.9
38.5
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
85.8
0.81
0.9
80.6
37
Minor 5ss
40.7
-1
2.8
52.9
44.2
Minor BPS
47.8
-0.3
2
56.91
43.8

Associated Gene:

Gene:
ASPH
Ensembl Gene ID:
ENSAPLG00000006796
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022689
119765829 - 119875014
109186
ENSAPLT00000007063
119765829 - 119875014
109186
ENSAPLT00000007061
119765829 - 119875014
109186
ENSAPLT00000038830
119764893 - 119862587
97695