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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119771911_119775904_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
119771911 - 119775904
Intron Length:
3994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGCC
5'SS Class:
major
3'SS Sequence:
TCTTTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
CTTTGTTGAAGT
Flanking Amino Acid:
PEATGCRRGQIKYSVMHPGT
Intron Amino Acid Position:
758

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.2
66.4
40.8
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
89.7
0.89
0.6
84.8
22.9
Minor 5ss
38.4
-1.3
3.3
53.8
43.4
Minor BPS
48.6
-0
2.2
71.98
45.3

Associated Gene:

Gene:
ASPH
Ensembl Gene ID:
ENSAPLG00000006796
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038830
119764893 - 119862587
97695
ENSAPLT00000022689
119765829 - 119875014
109186
ENSAPLT00000007063
119765829 - 119875014
109186
ENSAPLT00000007061
119765829 - 119875014
109186