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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119775997_119776895_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119775997 - 119776895
Intron Length:
899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
AATCTCTTATTT
Flanking Amino Acid:
DWSQFTLWQQGRKNENACKG
Intron Amino Acid Position:
727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
74
36.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
80.2
0.68
0.9
74.9
39.6
Minor 5ss
33
-1.9
3.3
47.4
48
Minor BPS
58.7
0.35
1.6
72.76
38.1

Associated Gene:

Gene:
ASPH
Ensembl Gene ID:
ENSAPLG00000006796
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022689
119765829 - 119875014
109186
ENSAPLT00000007063
119765829 - 119875014
109186
ENSAPLT00000007061
119765829 - 119875014
109186
ENSAPLT00000038830
119764893 - 119862587
97695