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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119783230_119787862_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
119783230 - 119787862
Intron Length:
4633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACACATT
5'SS Class:
major
3'SS Sequence:
TGCAATCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TGTTTGATAATA
Flanking Amino Acid:
DALQRIGDKEAYKWYELGYQ
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.1
75.3
40.7
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
63.6
0.31
0.9
54.4
41
Minor 5ss
43.6
-0.7
3.3
66.1
45
Minor BPS
49
-0
2.2
68.44
38.2

Associated Gene:

Gene:
ASPH
Ensembl Gene ID:
ENSAPLG00000006796
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022689
119765829 - 119875014
109186
ENSAPLT00000007063
119765829 - 119875014
109186
ENSAPLT00000007061
119765829 - 119875014
109186
ENSAPLT00000038830
119764893 - 119862587
97695