About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119794457_119795927_R

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
119794457 - 119795927
Intron Length:
1471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TCAATCAAATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
TCTTGTTCAATC
Flanking Amino Acid:
KREADRQQFLGRMRSSLVTL
Intron Amino Acid Position:
527

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.5
29.4
Major BPS
67.7
0.44
1
58
38.9
Major PPT
54.9
0.11
1
53.7
40.2
Minor 5ss
39.8
-1.1
3.2
53.2
45
Minor BPS
51.9
0.04
1.9
65.76
40.9

Associated Gene:

Gene:
ASPH
Ensembl Gene ID:
ENSAPLG00000006796
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022689
119765829 - 119875014
109186
ENSAPLT00000007063
119765829 - 119875014
109186
ENSAPLT00000007061
119765829 - 119875014
109186
ENSAPLT00000038830
119764893 - 119862587
97695