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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119796079_119799845_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
119796079 - 119799845
Intron Length:
3767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATAAA
5'SS Class:
major
3'SS Sequence:
TGATTCTCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
GTTCTAATAATA
Flanking Amino Acid:
SPRARYGKAQSEDDLAEKMR
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
76.7
33.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
74.8
0.56
0.9
66.9
40.3
Minor 5ss
33.3
-1.9
3
41.9
44.8
Minor BPS
48.3
-0.1
1.8
63.76
35.9

Associated Gene:

Gene:
ASPH
Ensembl Gene ID:
ENSAPLG00000006796
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022689
119765829 - 119875014
109186
ENSAPLT00000007063
119765829 - 119875014
109186
ENSAPLT00000007061
119765829 - 119875014
109186
ENSAPLT00000038830
119764893 - 119862587
97695