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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_11979757_11981174_R

Intron Information:

Intron Rank:
129686
Intron Class:
major
Intron Phase:
Intron Coordinates:
11979757 - 11981174
Intron Length:
1418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCACCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTTTCTCACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
76.1
35
Major BPS
85
0.87
0.8
85.6
23
Major PPT
72.8
0.51
0.8
66.4
34.7
Minor 5ss
38.8
-1.3
2.8
48.7
47.1
Minor BPS
59.7
0.38
1.9
79.4
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016946
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035349
11973091 - 11981699
8609