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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_119801856_119824924_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
119801856 - 119824924
Intron Length:
23069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
AAATTTCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTAAATT
Flanking Amino Acid:
TEDYSTDNPVAKKKKKPKLL
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
80.2
30.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.1
0.5
0.9
63.4
42.9
Minor 5ss
39.1
-1.2
2.8
40.8
45.4
Minor BPS
64.5
0.53
1.6
80
36.6

Associated Gene:

Gene:
ASPH
Ensembl Gene ID:
ENSAPLG00000006796
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038830
119764893 - 119862587
97695
ENSAPLT00000022689
119765829 - 119875014
109186
ENSAPLT00000007063
119765829 - 119875014
109186
ENSAPLT00000007061
119765829 - 119875014
109186